PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003056
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family DBB
Protein Properties Length: 295aa    MW: 32599.9 Da    PI: 5.3558
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-3260PU_refplantGDBView CDS
gnl|UG|Psi#S41649082PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.5e-07445540
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                C+ +++  ++ fC  ++  lC +C ++ H        H++ 
  Psi003056  4 QCDACQSADASVFCCADEAALCMKCDSKVHDAnklaskHRRL 45
               7*****************************446777778765 PP

2zf-B_box30.66.9e-105998437
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                +C+ ++e ++ +fC+ ++  lC+dC l++H+       H
  Psi003056 59 LRCDICQERRAFFFCQADRAVLCRDCDLSIHSAneltakH 98
               69*****************************656666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.281147IPR000315B-box-type zinc finger
SMARTSM003363.1E-9147IPR000315B-box-type zinc finger
CDDcd000213.86E-7347No hitNo description
PfamPF006432.4E-5446IPR000315B-box-type zinc finger
SMARTSM003362.8E-1656103IPR000315B-box-type zinc finger
PROSITE profilePS5011910.26756103IPR000315B-box-type zinc finger
PfamPF006439.7E-85999IPR000315B-box-type zinc finger
CDDcd000212.35E-1160103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKVQCDACQS ADASVFCCAD EAALCMKCDS KVHDANKLAS KHRRLSLLEP NSSSSTDSLR  60
CDICQERRAF FFCQADRAVL CRDCDLSIHS ANELTAKHNR FLVPGTRVSL KPMETLSCPE  120
KAVATVTKAL MPPAQRMPNH AQPSMDLPVE TVTSTSNSDF SQYLNEVEQF LTSASPERLD  180
WGGSSEGDAI GKYMDSDWAP NLGLLPEGFY GDSLAEVPHM PSPITDSGFC MYSRLGITMK  240
PKAKQQQQVQ QVPYFLPGFD TGDDNFTVPD IVFAPSAKRM RMSNTTLHDQ QLFTM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVK40.0A9NVK4_PICSI; Putative uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-45salt tolerance homolog2